Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00900.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 602
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24


Found at i:78 original size:15 final size:15

Alignment explanation


    Indices: 58--90  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

         48 TGGCACCCAA

                     *     
         58 AGCCGAGAAGAAGCC
          1 AGCCGAGAAAAAGCC

                           
         73 AGCCGAGAAAAAGCC
          1 AGCCGAGAAAAAGCC

               
         88 AGC
          1 AGC

         91 TGAGGAGAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.42, C:0.27, G:0.30, T:0.00


Consensus pattern (15 bp):   
AGCCGAGAAAAAGCC
Done.