Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00906.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2266
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30


Found at i:2065 original size:47 final size:47

Alignment explanation


    Indices: 1996--2089  Score: 161
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1986 AAGTCAACAG

                      *                      *             
       1996 AATGTATGAATTATTTAATAAAATGAGTAGGAGCTGTGGCATGTCCA
          1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA

                                     *                     
       2043 AATGTATGAAGTATTTAATAAAATGCGTAGGAGATGTGGCATGTCCA
          1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA

       2090 TCAAACTTCC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  47   44  1.00

ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31


Consensus pattern (47 bp):   
AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
Done.