Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00906.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:843 original size:47 final size:47

Alignment explanation


    Indices: 774--867  Score: 161
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        764 AAGTCAACAG

                      *                      *             
        774 AATGTATGAATTATTTAATAAAATGAGTAGGAGCTGTGGCATGTCCA
          1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA

                                     *                     
        821 AATGTATGAAGTATTTAATAAAATGCGTAGGAGATGTGGCATGTCCA
          1 AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA

        868 TCAAACTTCC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  47   44  1.00

ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31


Consensus pattern (47 bp):   
AATGTATGAAGTATTTAATAAAATGAGTAGGAGATGTGGCATGTCCA
Done.