Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02196.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 740

Length: 1234
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25


Found at i:143 original size:7 final size:7

Alignment explanation


    Indices: 127--156  Score: 53
    Period size: 7  Copynumber: 4.4  Consensus size: 7

        117 AATAGGGCGT

                   
        127 AAGA-AG
          1 AAGAGAG

                   
        133 AAGAGAG
          1 AAGAGAG

                   
        140 AAGAGAG
          1 AAGAGAG

                   
        147 AAGAGAG
          1 AAGAGAG

               
        154 AAG
          1 AAG

        157 TGAGCGGGTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    4  0.17
   7   19  0.83

ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00


Consensus pattern (7 bp):   
AAGAGAG

Done.