Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00916.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1565
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:1414 original size:16 final size:17

Alignment explanation


    Indices: 1379--1413  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 17

       1369 TAGAAGGGAC

                             
       1379 TTTGTATTTGTTTTTGT
          1 TTTGTATTTGTTTTTGT

                             
       1396 TTTGT-TTTGTTTTT-T
          1 TTTGTATTTGTTTTTGT

               
       1411 TTT
          1 TTT

       1414 TTTCTTTTTG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    4  0.22
  16    9  0.50
  17    5  0.28

ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83


Consensus pattern (17 bp):   
TTTGTATTTGTTTTTGT
Done.