Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00926.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1950
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.35


Found at i:890 original size:56 final size:56

Alignment explanation


    Indices: 778--895  Score: 148
    Period size: 56  Copynumber: 2.1  Consensus size: 56

        768 TTATAATCCA

                                *             *            *   *    
        778 TTTGGCTTTGTTTGGTTGATTGGGAAACAAGAGACACCGAAGCAAAATCTTTGGAT
          1 TTTGGCTTTGTTTGGTTGATGGGGAAACAAGAGAAACCGAAGCAAAAGCTTCGGAT

                                                *       **   *       
        834 TTTGGCTTTGTTTGGTTGATGGGGAAACAAGAGAAAGC-AAGGCGTAAGGTTCGGAT
          1 TTTGGCTTTGTTTGGTTGATGGGGAAACAAGAGAAACCGAA-GCAAAAGCTTCGGAT

                  
        890 TTTGGC
          1 TTTGGC

        896 ATTATAATCC


Statistics
Matches: 53,  Mismatches: 8, Indels: 2
        0.84            0.13        0.03

Matches are distributed among these distances:
  55    2  0.04
  56   51  0.96

ACGTcount: A:0.26, C:0.11, G:0.31, T:0.31


Consensus pattern (56 bp):   
TTTGGCTTTGTTTGGTTGATGGGGAAACAAGAGAAACCGAAGCAAAAGCTTCGGAT
Done.