Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00927.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1543
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:1178 original size:106 final size:108

Alignment explanation


    Indices: 989--1192  Score: 358
    Period size: 106  Copynumber: 1.9  Consensus size: 108

        979 GCTGATCCTA

                                                                             
        989 GCAATGCAAGAAGTGTATCACCAGATTCTGATGCTTCCCGGAAGGATCAAAAGGGTGAGAACCAG
          1 GCAATGCAAGAAGTGTATCACCAGATTCTGA--CTTCCCGGAAGGATCAAAAGGGTGAGAACCAG

                                                         
       1054 ATTGGAGGACCTTCTCAAGATGCCAAAAGATGACGAGCCTTTTGT
         64 ATTGGAGGACCTTCTCAAGATGCCAAAAGATGACGAGCCTTTTGT

                            *                                            *   
       1099 GCAATGCAAGAAGTGTGTCACCAGATTCTGA-TTCCCGGAAGGATC-AAAGGGTGAGAACCGGAT
          1 GCAATGCAAGAAGTGTATCACCAGATTCTGACTTCCCGGAAGGATCAAAAGGGTGAGAACCAGAT

                                           
       1162 TGGAGGACCTTCTCAAGATGCCAAAAGATGA
         66 TGGAGGACCTTCTCAAGATGCCAAAAGATGA

       1193 TGCAGGGCCT


Statistics
Matches: 92,  Mismatches: 2, Indels: 4
        0.94            0.02        0.04

Matches are distributed among these distances:
 106   48  0.52
 107   14  0.15
 110   30  0.33

ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21


Consensus pattern (108 bp):   
GCAATGCAAGAAGTGTATCACCAGATTCTGACTTCCCGGAAGGATCAAAAGGGTGAGAACCAGAT
TGGAGGACCTTCTCAAGATGCCAAAAGATGACGAGCCTTTTGT
Done.