Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00939.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3191
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34


Found at i:2580 original size:23 final size:23

Alignment explanation


    Indices: 2538--2588  Score: 68
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       2528 CTTTGAGAGT

                           *    *  
       2538 TTTTCCTCTGCTACTGTAGCTCG
          1 TTTTCCTCTGCTACTATAGCACG

                                    
       2561 TTTTCCTCTGCTTA-TATAGCACG
          1 TTTTCCTCTGC-TACTATAGCACG

                 
       2584 TTTTC
          1 TTTTC

       2589 TAGGTTTTGT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  23   23  0.92
  24    2  0.08

ACGTcount: A:0.12, C:0.27, G:0.14, T:0.47


Consensus pattern (23 bp):   
TTTTCCTCTGCTACTATAGCACG
Done.