Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00940.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5597
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32


Found at i:93 original size:23 final size:23

Alignment explanation


    Indices: 51--101  Score: 68
    Period size: 23  Copynumber: 2.2  Consensus size: 23

         41 CTTTGAGAGT

                           *    *  
         51 TTTTCCTCTGCTACTGTAGCTCG
          1 TTTTCCTCTGCTACTATAGCACG

                                    
         74 TTTTCCTCTGCTTA-TATAGCACG
          1 TTTTCCTCTGC-TACTATAGCACG

                 
         97 TTTTC
          1 TTTTC

        102 TAGGTTTTGT


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  23   23  0.92
  24    2  0.08

ACGTcount: A:0.12, C:0.27, G:0.14, T:0.47


Consensus pattern (23 bp):   
TTTTCCTCTGCTACTATAGCACG

Found at i:4286 original size:21 final size:21

Alignment explanation


    Indices: 4260--4305  Score: 92
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       4250 GGGATTTGAT

                                 
       4260 TGACTTACTTTTTATAGCTGC
          1 TGACTTACTTTTTATAGCTGC

                                 
       4281 TGACTTACTTTTTATAGCTGC
          1 TGACTTACTTTTTATAGCTGC

                
       4302 TGAC
          1 TGAC

       4306 GCAATCCTCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46


Consensus pattern (21 bp):   
TGACTTACTTTTTATAGCTGC
Done.