Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g00971.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:27 original size:6 final size:6

Alignment explanation


    Indices: 11--58  Score: 87
    Period size: 6  Copynumber: 8.0  Consensus size: 6

          1 ACCAACAGTA

                   *                                               
         11 CTCTTC TTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC
          1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC

         59 TTTCCCAACA


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (6 bp):   
CTCTTC

Done.