Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01002.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2396
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32


Found at i:1136 original size:14 final size:14

Alignment explanation

Indices: 1117--1156 Score: 71 Period size: 14 Copynumber: 2.9 Consensus size: 14 1107 TCTCTCTCAT * 1117 ACACACACGCACAC 1 ACACACATGCACAC 1131 ACACACATGCACAC 1 ACACACATGCACAC 1145 ACACACATGCAC 1 ACACACATGCAC 1157 TCTCTCTCCC Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 14 25 1.00 ACGTcount: A:0.42, C:0.45, G:0.07, T:0.05 Consensus pattern (14 bp): ACACACATGCACAC Done.