Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga09g01002.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2396
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Found at i:1136 original size:14 final size:14
Alignment explanation
Indices: 1117--1156 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
1107 TCTCTCTCAT
*
1117 ACACACACGCACAC
1 ACACACATGCACAC
1131 ACACACATGCACAC
1 ACACACATGCACAC
1145 ACACACATGCAC
1 ACACACATGCAC
1157 TCTCTCTCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.42, C:0.45, G:0.07, T:0.05
Consensus pattern (14 bp):
ACACACATGCACAC
Done.