Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01002.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3323
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:1136 original size:14 final size:14

Alignment explanation


    Indices: 1117--1156  Score: 71
    Period size: 14  Copynumber: 2.9  Consensus size: 14

       1107 TCTCTCTCAT

                   *      
       1117 ACACACACGCACAC
          1 ACACACATGCACAC

                          
       1131 ACACACATGCACAC
          1 ACACACATGCACAC

                        
       1145 ACACACATGCAC
          1 ACACACATGCAC

       1157 TCTCTCTCCC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  14   25  1.00

ACGTcount: A:0.42, C:0.45, G:0.07, T:0.05


Consensus pattern (14 bp):   
ACACACATGCACAC

Found at i:2178 original size:4 final size:4

Alignment explanation


    Indices: 2169--2270  Score: 177
    Period size: 4  Copynumber: 25.5  Consensus size: 4

       2159 AGTACAAGTG

                                           *    *    *                 
       2169 ATAC ATAC ATAC ATAC ATAC ATAC ACAC ACAC AAAC ATAC ATAC ATAC
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC

                                                                       
       2217 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC

                   
       2265 ATAC AT
          1 ATAC AT

       2271 GCATGCAGAT


Statistics
Matches: 95,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   4   95  1.00

ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23


Consensus pattern (4 bp):   
ATAC

Done.