Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01017.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 238

Length: 398
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31


Found at i:304 original size:53 final size:53

Alignment explanation


    Indices: 224--339  Score: 223
    Period size: 53  Copynumber: 2.2  Consensus size: 53

        214 AACGTTATCG

                                                                 
        224 GAGTAAGTAAACTCAAGTGATTCGAGTCTATGGCATGTATAGGGTTTTAATGT
          1 GAGTAAGTAAACTCAAGTGATTCGAGTCTATGGCATGTATAGGGTTTTAATGT

                                                                 
        277 GAGTAAGTAAACTCAAGTGATTCGAGTCTATGGCATGTATAGGGTTTTAATGT
          1 GAGTAAGTAAACTCAAGTGATTCGAGTCTATGGCATGTATAGGGTTTTAATGT

                 *    
        330 GAGTATGTAA
          1 GAGTAAGTAA

        340 TATTATGATT


Statistics
Matches: 62,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  53   62  1.00

ACGTcount: A:0.31, C:0.09, G:0.27, T:0.34


Consensus pattern (53 bp):   
GAGTAAGTAAACTCAAGTGATTCGAGTCTATGGCATGTATAGGGTTTTAATGT
Done.