Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01029.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4490
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:3191 original size:57 final size:57

Alignment explanation


    Indices: 3103--3216  Score: 228
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       3093 AACATGTTAG

                                                                     
       3103 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
          1 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA

                                                                     
       3160 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
          1 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA

       3217 ACAAAACCTA


Statistics
Matches: 57,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   57  1.00

ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19


Consensus pattern (57 bp):   
TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
Done.