Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01030.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4625
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:2224 original size:57 final size:57

Alignment explanation


    Indices: 2136--2249  Score: 228
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       2126 AACATGTTAG

                                                                     
       2136 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
          1 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA

                                                                     
       2193 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
          1 TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA

       2250 ACAAAACCTA


Statistics
Matches: 57,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   57  1.00

ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19


Consensus pattern (57 bp):   
TCTTAACAGTGACAGGCGAACTAAATTCCAAAGTAGCAGGAGAAAGCCACTTGTCCA
Done.