Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02203.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2792
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:1274 original size:6 final size:6

Alignment explanation


    Indices: 1263--1292  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1253 TACAAGCCTG

                                              
       1263 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC
          1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC

       1293 ATCACCATCT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33


Consensus pattern (6 bp):   
CTCTCC

Found at i:1303 original size:18 final size:18

Alignment explanation


    Indices: 1264--1304  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1254 ACAAGCCTGC

                       *  *  *
       1264 TCTCCCTCTCCCTCTCCC
          1 TCTCCCTCTCCATCACCA

                              
       1282 TCTCCCTCTCCATCACCA
          1 TCTCCCTCTCCATCACCA

                 
       1300 TCTCC
          1 TCTCC

       1305 TACATTTTCT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.07, C:0.61, G:0.00, T:0.32


Consensus pattern (18 bp):   
TCTCCCTCTCCATCACCA
Done.