Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01044.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2288
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:891 original size:87 final size:87

Alignment explanation


    Indices: 745--919  Score: 332
    Period size: 87  Copynumber: 2.0  Consensus size: 87

        735 ATCAAAGGAA

                                                                             
        745 AAGGTACATGAGATGCCCATTCTTGAAGGAAATATAATAAGCTGACATAGTCTTTCAGACCTTTT
          1 AAGGTACATGAGATGCCCATTCTTGAAGGAAATATAATAAGCTGACATAGTCTTTCAGACCTTTT

                                  
        810 ATTATTATTATTATTTTTTTAC
         66 ATTATTATTATTATTTTTTTAC

                            *            *                                   
        832 AAGGTACATGAGATGCTCATTCTTGAAGGTAATATAATAAGCTGACATAGTCTTTCAGACCTTTT
          1 AAGGTACATGAGATGCCCATTCTTGAAGGAAATATAATAAGCTGACATAGTCTTTCAGACCTTTT

                                  
        897 ATTATTATTATTATTTTTTTAC
         66 ATTATTATTATTATTTTTTTAC

             
        919 A
          1 A

        920 TCTCTCGCAG


Statistics
Matches: 86,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  87   86  1.00

ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41


Consensus pattern (87 bp):   
AAGGTACATGAGATGCCCATTCTTGAAGGAAATATAATAAGCTGACATAGTCTTTCAGACCTTTT
ATTATTATTATTATTTTTTTAC
Done.