Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01047.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3050
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:2091 original size:26 final size:27

Alignment explanation


    Indices: 2062--2120  Score: 66
    Period size: 29  Copynumber: 2.1  Consensus size: 27

       2052 TCTTTTTCTT

                                       
       2062 TTATCTAAG-TATCCATGAGTCTGAAA
          1 TTATCTAAGATATCCATGAGTCTGAAA

                 * **                    
       2088 TTATTTTGGGTATATCCATGAGTCTGAAA
          1 TTA-TCTAAG-ATATCCATGAGTCTGAAA

                
       2117 TTAT
          1 TTAT

       2121 TTTGGGTATA


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  26    3  0.11
  27    3  0.11
  28    1  0.04
  29   20  0.74

ACGTcount: A:0.31, C:0.12, G:0.17, T:0.41


Consensus pattern (27 bp):   
TTATCTAAGATATCCATGAGTCTGAAA

Found at i:2103 original size:29 final size:29

Alignment explanation


    Indices: 2071--2130  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2061 TTTATCTAAG

                                         
       2071 TATCCATGAGTCTGAAATTATTTTGGGTA
          1 TATCCATGAGTCTGAAATTATTTTGGGTA

                                         
       2100 TATCCATGAGTCTGAAATTATTTTGGGTA
          1 TATCCATGAGTCTGAAATTATTTTGGGTA

              
       2129 TA
          1 TA

       2131 CTCTCATCAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42


Consensus pattern (29 bp):   
TATCCATGAGTCTGAAATTATTTTGGGTA
Done.