Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01058.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2896
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:379 original size:15 final size:16

Alignment explanation


    Indices: 359--388  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        349 GCTGAAAGAG

                            
        359 TGTTTTCCT-AGAAAA
          1 TGTTTTCCTGAGAAAA

                           
        374 TGTTTTCCTGAGAAA
          1 TGTTTTCCTGAGAAA

        389 CAACCGAGTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40


Consensus pattern (16 bp):   
TGTTTTCCTGAGAAAA
Done.