Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02204.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:876 original size:15 final size:14

Alignment explanation


    Indices: 854--886  Score: 50
    Period size: 15  Copynumber: 2.4  Consensus size: 14

        844 ATTACATTCC

                          
        854 TTTTTTCTTTTCTT
          1 TTTTTTCTTTTCTT

                           
        868 TTCTTTTCTTTT-TT
          1 TT-TTTTCTTTTCTT

                 
        882 TTTTT
          1 TTTTT

        887 ATATATAAAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    3  0.17
  14    6  0.33
  15    9  0.50

ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88


Consensus pattern (14 bp):   
TTTTTTCTTTTCTT
Done.