Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01065.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31


Found at i:927 original size:20 final size:20

Alignment explanation


    Indices: 902--941  Score: 55
    Period size: 22  Copynumber: 1.9  Consensus size: 20

        892 CTGATCGAAA

                                 
        902 TATG-AAATTTTATATTTTCT
          1 TATGAAAATTTTAT-TTTTCT

                                
        922 TATGAAAAATTTTATTTTTC
          1 TATG-AAAATTTTATTTTTC

        942 AAGTTGTAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  20    4  0.22
  21    5  0.28
  22    9  0.50

ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57


Consensus pattern (20 bp):   
TATGAAAATTTTATTTTTCT
Done.