Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01067.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2998
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31


Found at i:2899 original size:16 final size:15

Alignment explanation


    Indices: 2864--2923  Score: 56
    Period size: 12  Copynumber: 4.1  Consensus size: 15

       2854 GTTTGAAGAT

                           
       2864 TTGATGTTTGTTTG-
          1 TTGATGTTTGTTTGC

                           
       2878 TT--TGTTTGTTTGC
          1 TTGATGTTTGTTTGC

                       *     
       2891 TTGCATGTTTTTTTTG-
          1 TTG-ATG-TTTGTTTGC

                            
       2907 TTGATGTTGTGTTTGC
          1 TTGATGTT-TGTTTGC

             
       2923 T
          1 T

       2924 ATGTGTGCAA


Statistics
Matches: 37,  Mismatches: 2, Indels: 12
        0.73            0.04        0.24

Matches are distributed among these distances:
  12   10  0.27
  13    2  0.05
  14    4  0.11
  15    8  0.22
  16    6  0.16
  17    7  0.19

ACGTcount: A:0.05, C:0.05, G:0.25, T:0.65


Consensus pattern (15 bp):   
TTGATGTTTGTTTGC
Done.