Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01070.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2294
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:2067 original size:5 final size:5

Alignment explanation


    Indices: 2060--2096  Score: 65
    Period size: 5  Copynumber: 7.4  Consensus size: 5

       2050 CAACTCAGGA

                *                                       
       2060 AGGGA AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG
          1 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG AG

       2097 TCTTGTGATG


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   31  1.00

ACGTcount: A:0.24, C:0.00, G:0.76, T:0.00


Consensus pattern (5 bp):   
AGGGG

Found at i:2266 original size:3 final size:3

Alignment explanation


    Indices: 2258--2292  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

       2248 TAAACTTGTT

                                                          
       2258 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       2293 CT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTA

Done.