Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4282
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35


Found at i:1210 original size:21 final size:21

Alignment explanation


    Indices: 1184--1244  Score: 70
    Period size: 21  Copynumber: 2.9  Consensus size: 21

       1174 TTTTACCTTC

                                  
       1184 AACCCTAAACCTAAAATCAT-G
          1 AACCCTAAACCTAAAATC-TCG

                     *   *       
       1205 AACCCTAAATCTAGAATCTCG
          1 AACCCTAAACCTAAAATCTCG

              * *              
       1226 AATCTTAAACCTAAAATCT
          1 AACCCTAAACCTAAAATCT

       1245 TAAACTTGAA


Statistics
Matches: 33,  Mismatches: 6, Indels: 2
        0.80            0.15        0.05

Matches are distributed among these distances:
  20    1  0.03
  21   32  0.97

ACGTcount: A:0.44, C:0.26, G:0.05, T:0.25


Consensus pattern (21 bp):   
AACCCTAAACCTAAAATCTCG

Found at i:1420 original size:26 final size:26

Alignment explanation


    Indices: 1364--1421  Score: 73
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1354 CCAAACACGT

                                    * *
       1364 AACCTTAAACCTCGAACTCAAACCTTG
          1 AACCTTAAACCTC-AACTCAAACCCTA

                                       
       1391 AACCTTAAATCCT-AACTCAAACCCTA
          1 AACCTTAAA-CCTCAACTCAAACCCTA

                 
       1417 AACCT
          1 AACCT

       1422 CAAAGTTTGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  26   16  0.57
  27    9  0.32
  28    3  0.11

ACGTcount: A:0.40, C:0.34, G:0.03, T:0.22


Consensus pattern (26 bp):   
AACCTTAAACCTCAACTCAAACCCTA
Done.