Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 334

Length: 557
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26


Found at i:537 original size:24 final size:20

Alignment explanation


    Indices: 493--533  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        483 TATTGAACTT

                                
        493 AAGCTTATCTAGAACAATGA
          1 AAGCTTATCTAGAACAATGA

                                
        513 AAGCTTATCTAGAACAATGA
          1 AAGCTTATCTAGAACAATGA

             
        533 A
          1 A

        534 TGAATAACGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24


Consensus pattern (20 bp):   
AAGCTTATCTAGAACAATGA
Done.