Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01103.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5868
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:5571 original size:80 final size:80

Alignment explanation


    Indices: 5438--5597  Score: 320
    Period size: 80  Copynumber: 2.0  Consensus size: 80

       5428 CACAACCATA

                                                                             
       5438 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
          1 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT

                           
       5503 TATGCATTGAGGTTT
         66 TATGCATTGAGGTTT

                                                                             
       5518 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
          1 TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT

                           
       5583 TATGCATTGAGGTTT
         66 TATGCATTGAGGTTT

       5598 GGCTCCAAGT


Statistics
Matches: 80,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  80   80  1.00

ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31


Consensus pattern (80 bp):   
TCAGAAGTGTAATTGCTAAAGCCAACGCACTAATGCCTTCCTCTTCACTATTGGCAGCTGAAGCT
TATGCATTGAGGTTT
Done.