Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01124.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2642
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32


Found at i:104 original size:1 final size:1

Alignment explanation


    Indices: 98--127  Score: 51
    Period size: 1  Copynumber: 30.0  Consensus size: 1

         88 GAGTAGTTTG

                           *              
         98 TTTTTTTTTTTTTTTGTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        128 CAAACTTTGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97


Consensus pattern (1 bp):   
T

Found at i:119 original size:15 final size:16

Alignment explanation


    Indices: 94--127  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

         84 CATTGAGTAG

                            
         94 TTTGTTTTTTTTTTTT
          1 TTTGTTTTTTTTTTTT

                            
        110 TTTGTTTTTTTTTTTT
          1 TTTGTTTTTTTTTTTT

              
        126 TT
          1 TT

        128 CAAACTTTGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94


Consensus pattern (16 bp):   
TTTGTTTTTTTTTTTT
Done.