Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01130.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2699
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Found at i:87 original size:12 final size:12

Alignment explanation


    Indices: 70--96  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         60 TGTTTAAAAA

                        
         70 AAAAAAAGAAAG
          1 AAAAAAAGAAAG

                        
         82 AAAAAAAGAAAG
          1 AAAAAAAGAAAG

               
         94 AAA
          1 AAA

         97 GAGAAATTGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (12 bp):   
AAAAAAAGAAAG

Found at i:87 original size:16 final size:16

Alignment explanation


    Indices: 66--98  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

         56 TTGGTGTTTA

                            
         66 AAAAAAAAAAAGAAAG
          1 AAAAAAAAAAAGAAAG

                   *        
         82 AAAAAAAGAAAGAAAG
          1 AAAAAAAAAAAGAAAG

             
         98 A
          1 A

         99 GAAATTGGGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (16 bp):   
AAAAAAAAAAAGAAAG
Done.