Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01138.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 758

Length: 1264
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:506 original size:131 final size:131

Alignment explanation


    Indices: 262--515  Score: 305
    Period size: 131  Copynumber: 1.9  Consensus size: 131

        252 CAATTATTCA

                        **  *        **              *                       
        262 TTTAAAAATTCTTTAATACGAAGGCGGTGTTCGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
          1 TTTAAAAATTCTCCAAAACGAAGGCAATGTTCGATATTTGGAAATTCGCGGAATCGTGCCCTAAC

            *               *                   *                            
        327 GTGCTGGGTTACAATTTCTCGTTTGTTCAAAATAATTGAATGTCCCTTTAGAATTTCATTCATGC
         66 ATGCTGGGTTACAATTCCTCGTTTGTTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGC

             
        392 G
        131 G

                                           *   *            *     *        * 
        393 TTTAAAAATTCTCCAAAACGAAGGCAATGTTTGATGTTTGGAAATTCGGGGAATTGTGCCCTATC
          1 TTTAAAAATTCTCCAAAACGAAGGCAATGTTCGATATTTGGAAATTCGCGGAATCGTGCCCTAAC

               *      * *                     *          *              
        458 ATGTTGGGTTGCGATCTCCT-GTTTGTTCAAAATGATCGAA-GATTCCTTTAGAATTTCA
         66 ATGCTGGGTTACAAT-TCCTCGTTTGTTCAAAATAATCGAATG-TCCCTTTAGAATTTCA

        516 CCCATACTCT


Statistics
Matches: 102,  Mismatches: 19, Indels: 4
        0.82            0.15        0.03

Matches are distributed among these distances:
 130    1  0.01
 131   98  0.96
 132    3  0.03

ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36


Consensus pattern (131 bp):   
TTTAAAAATTCTCCAAAACGAAGGCAATGTTCGATATTTGGAAATTCGCGGAATCGTGCCCTAAC
ATGCTGGGTTACAATTCCTCGTTTGTTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGC
G
Done.