Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01141.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8486
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1952 original size:286 final size:286

Alignment explanation


    Indices: 1440--1985  Score: 1013
    Period size: 286  Copynumber: 1.9  Consensus size: 286

       1430 ATAAAACGCC

                                                                       *     
       1440 TGCTAATTTGAGGGACTGTTTTATATTGTAATTTTAATTATTTACTCTTGAAAATTAGGTCTGCT
          1 TGCTAATTTGAGGGACTGTTTTATATTGTAATTTTAATTATTTACTCTTGAAAATTAGGACTGCT

                                                                             
       1505 AAGTTGATTGACTACTTCTGTAAACTTTGACATTTCTTTAAAGATGAGAGAAAGATTGATTTCCT
         66 AAGTTGATTGACTACTTCTGTAAACTTTGACATTTCTTTAAAGATGAGAGAAAGATTGATTTCCT

                                                 *                           
       1570 GCTAAGCTGATCCATGTCTTACAGTCTTAGTTATCATTTTATTTTACTTTTTGTCTCGCTCGTAT
        131 GCTAAGCTGATCCATGTCTTACAGTCTTAGTTATCATGTTATTTTACTTTTTGTCTCGCTCGTAT

                                                  *             *            
       1635 ATCTTGATATGATTCTTGAATAAAGTTCTTGTCTGCTATGCTTATGACCTTTTTGTTATTTTGAA
        196 ATCTTGATATGATTCTTGAATAAAGTTCTTGTCTGCTACGCTTATGACCTTTCTGTTATTTTGAA

                                      
       1700 TGCTTATTTATTTATTTAGTTCCTTA
        261 TGCTTATTTATTTATTTAGTTCCTTA

                                                                             
       1726 TGCTAATTTGAGGGACTGTTTTATATTGTAATTTTAATTATTTACTCTTGAAAATTAGGGACTGC
          1 TGCTAATTTGAGGGACTGTTTTATATTGTAATTTTAATTATTTACTCTTGAAAATTA-GGACTGC

                                                                             
       1791 TAAGTTGATTGACTACTTCTGTAAACTTTGACATTTCTTTAAAGATGAGAGAAAGATTGATTTCC
         65 TAAGTTGATTGACTACTTCTGTAAACTTTGACATTTCTTTAAAGATGAGAGAAAGATTGATTTCC

                                      *      *                               
       1856 TGCTAAGCTGATCCATGTCTTACAGTTTTAGTTGTCATGTTATTTTAC-TTTTGTCTCGCTCGTA
        130 TGCTAAGCTGATCCATGTCTTACAGTCTTAGTTATCATGTTATTTTACTTTTTGTCTCGCTCGTA

                                                           *                 
       1920 TATCTTGATATGATTCTTGAATAAAGTTCTTGTCTGCTACGCTTATGGCCTTTCTGTTATTTTGA
        195 TATCTTGATATGATTCTTGAATAAAGTTCTTGTCTGCTACGCTTATGACCTTTCTGTTATTTTGA

             
       1985 A
        260 A

       1986 ATTTTTTTTA


Statistics
Matches: 252,  Mismatches: 7, Indels: 2
        0.97            0.03        0.01

Matches are distributed among these distances:
 286  136  0.54
 287  116  0.46

ACGTcount: A:0.25, C:0.14, G:0.16, T:0.46


Consensus pattern (286 bp):   
TGCTAATTTGAGGGACTGTTTTATATTGTAATTTTAATTATTTACTCTTGAAAATTAGGACTGCT
AAGTTGATTGACTACTTCTGTAAACTTTGACATTTCTTTAAAGATGAGAGAAAGATTGATTTCCT
GCTAAGCTGATCCATGTCTTACAGTCTTAGTTATCATGTTATTTTACTTTTTGTCTCGCTCGTAT
ATCTTGATATGATTCTTGAATAAAGTTCTTGTCTGCTACGCTTATGACCTTTCTGTTATTTTGAA
TGCTTATTTATTTATTTAGTTCCTTA
Done.