Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01158.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1373
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:975 original size:26 final size:26

Alignment explanation


    Indices: 945--998  Score: 108
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        935 TCTAAGAAAA

                                      
        945 GTAAAATAAAATTATGTGTTGAAAGT
          1 GTAAAATAAAATTATGTGTTGAAAGT

                                      
        971 GTAAAATAAAATTATGTGTTGAAAGT
          1 GTAAAATAAAATTATGTGTTGAAAGT

              
        997 GT
          1 GT

        999 CCTACAATAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   28  1.00

ACGTcount: A:0.44, C:0.00, G:0.20, T:0.35


Consensus pattern (26 bp):   
GTAAAATAAAATTATGTGTTGAAAGT
Done.