Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01159.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2003
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33


Found at i:99 original size:5 final size:5

Alignment explanation


    Indices: 89--117  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

         79 AAACAACATC

                                              
         89 TTTGT TTTGT TTTGT TTTGT TTTGT TTTG
          1 TTTGT TTTGT TTTGT TTTGT TTTGT TTTG

        118 ATGGGGCATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79


Consensus pattern (5 bp):   
TTTGT

Done.