Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01164.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3979
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32


Found at i:2162 original size:16 final size:16

Alignment explanation


    Indices: 2141--2175  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       2131 TGCATATTAA

                          * 
       2141 TTTTCTCAAGGTAGGT
          1 TTTTCTCAAGGTAGAT

                            
       2157 TTTTCTCAAGGTAGAT
          1 TTTTCTCAAGGTAGAT

               
       2173 TTT
          1 TTT

       2176 GGCATCAAGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.20, C:0.11, G:0.20, T:0.49


Consensus pattern (16 bp):   
TTTTCTCAAGGTAGAT

Found at i:3686 original size:3 final size:3

Alignment explanation


    Indices: 3678--3728  Score: 93
    Period size: 3  Copynumber: 17.0  Consensus size: 3

       3668 AGGCAAGGAA

                                                      *                    
       3678 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAA GAC GAC GAC GAC GAC
          1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC

               
       3726 GAC
          1 GAC

       3729 ATGGCAGACG


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.35, C:0.31, G:0.33, T:0.00


Consensus pattern (3 bp):   
GAC

Done.