Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:167 original size:3 final size:3

Alignment explanation


    Indices: 159--209  Score: 93
    Period size: 3  Copynumber: 17.0  Consensus size: 3

        149 CGTCTGCCAT

                                    *                                      
        159 GTC GTC GTC GTC GTC GTC TTC GTC GTC GTC GTC GTC GTC GTC GTC GTC
          1 GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC GTC

               
        207 GTC
          1 GTC

        210 TTCCTTGCCT


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.00, C:0.33, G:0.31, T:0.35


Consensus pattern (3 bp):   
GTC

Found at i:1205 original size:15 final size:16

Alignment explanation


    Indices: 1171--1205  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1161 TCTTGATGCC

                *           
       1171 AAAATCTACCTTGAGA
          1 AAAACCTACCTTGAGA

                            
       1187 AAAACCTACCTTGAGA
          1 AAAACCTACCTTGAGA

               
       1203 AAA
          1 AAA

       1206 TTAATATGCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20


Consensus pattern (16 bp):   
AAAACCTACCTTGAGA
Done.