Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01168.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1895
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:1728 original size:17 final size:18

Alignment explanation


    Indices: 1692--1729  Score: 51
    Period size: 17  Copynumber: 2.2  Consensus size: 18

       1682 TTGGGCCGGG

                              
       1692 CACTAGTCTCTTCATAAA
          1 CACTAGTCTCTTCATAAA

                     *   *    
       1710 CACTAGT-TTTTCTTAAA
          1 CACTAGTCTCTTCATAAA

               
       1727 CAC
          1 CAC

       1730 AAGCACTACT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  17   11  0.61
  18    7  0.39

ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37


Consensus pattern (18 bp):   
CACTAGTCTCTTCATAAA
Done.