Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01168.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3305
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:3138 original size:17 final size:18

Alignment explanation


    Indices: 3102--3139  Score: 51
    Period size: 17  Copynumber: 2.2  Consensus size: 18

       3092 TTGGGCCGGG

                              
       3102 CACTAGTCTCTTCATAAA
          1 CACTAGTCTCTTCATAAA

                     *   *    
       3120 CACTAGT-TTTTCTTAAA
          1 CACTAGTCTCTTCATAAA

               
       3137 CAC
          1 CAC

       3140 AAGCACTACT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  17   11  0.61
  18    7  0.39

ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37


Consensus pattern (18 bp):   
CACTAGTCTCTTCATAAA
Done.