Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01173.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1962
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30


Found at i:204 original size:16 final size:16

Alignment explanation


    Indices: 175--222  Score: 55
    Period size: 16  Copynumber: 3.1  Consensus size: 16

        165 CCCTTAAACC

                   *        
        175 CTCTCTCCCT-TTTCT
          1 CTCTCTCTCTCTTTCT

                            
        190 CTCTCTCTCTCTTTCT
          1 CTCTCTCTCTCTTTCT

                      *      
        206 CT-TCCTCTCCCTTTCT
          1 CTCT-CTCTCTCTTTCT

             
        222 C
          1 C

        223 CACCCCTGCT


Statistics
Matches: 29,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  15   10  0.34
  16   19  0.66

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (16 bp):   
CTCTCTCTCTCTTTCT
Done.