Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01189.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2904
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:1088 original size:15 final size:15

Alignment explanation


    Indices: 1068--1103  Score: 63
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1058 TCTTCGATCT

                           
       1068 ACGATGACGATGATG
          1 ACGATGACGATGATG

                           
       1083 ACGATGACGATGATG
          1 ACGATGACGATGATG

             *    
       1098 ATGATG
          1 ACGATG

       1104 TTGAGAAGAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22


Consensus pattern (15 bp):   
ACGATGACGATGATG
Done.