Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01196.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1225
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:778 original size:32 final size:32

Alignment explanation


    Indices: 732--796  Score: 121
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        722 GCATTCGAAG

                                            
        732 TTAGTTTTAATATTGTCCTCAATTGTGCCAGC
          1 TTAGTTTTAATATTGTCCTCAATTGTGCCAGC

                     *                      
        764 TTAGTTTTATTATTGTCCTCAATTGTGCCAGC
          1 TTAGTTTTAATATTGTCCTCAATTGTGCCAGC

             
        796 T
          1 T

        797 GGGGCAGTCC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.20, C:0.18, G:0.15, T:0.46


Consensus pattern (32 bp):   
TTAGTTTTAATATTGTCCTCAATTGTGCCAGC
Done.