Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01201.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2947
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:1329 original size:24 final size:24

Alignment explanation


    Indices: 1297--1347  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1287 AGATAGTGGA

                                    
       1297 TTTGAGTAGCCAAATCTGTAATCC
          1 TTTGAGTAGCCAAATCTGTAATCC

                                    
       1321 TTTGAGTAGCCAAATCTGTAATCC
          1 TTTGAGTAGCCAAATCTGTAATCC

               
       1345 TTT
          1 TTT

       1348 CAGATGGTGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37


Consensus pattern (24 bp):   
TTTGAGTAGCCAAATCTGTAATCC
Done.