Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01202.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4066
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32


Found at i:709 original size:39 final size:39

Alignment explanation


    Indices: 649--726  Score: 104
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        639 CAGTGATTCA

                         *  *       *       *      
        649 AGGTTAGGTTGAAGCTTGAAGGATTCTTTCTTTTGGATT
          1 AGGTTAGGTTGAAACTCGAAGGATGCTTTCTTGTGGATT

                                                    
        688 AGGTT-GGCTTGAAACTCGAAGGATGCTTTCTTGTGGATT
          1 AGGTTAGG-TTGAAACTCGAAGGATGCTTTCTTGTGGATT

        727 TTGGTTTAGG


Statistics
Matches: 34,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  38    2  0.06
  39   32  0.94

ACGTcount: A:0.21, C:0.10, G:0.29, T:0.40


Consensus pattern (39 bp):   
AGGTTAGGTTGAAACTCGAAGGATGCTTTCTTGTGGATT
Done.