Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02217.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2067
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29


Found at i:1844 original size:21 final size:24

Alignment explanation


    Indices: 1813--1876  Score: 128
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       1803 GGTGATCAAC

                                    
       1813 AACAGCAGCAGCTGCAATATGAGG
          1 AACAGCAGCAGCTGCAATATGAGG

                                    
       1837 AACAGCAGCAGCTGCAATATGAGG
          1 AACAGCAGCAGCTGCAATATGAGG

                            
       1861 AACAGCAGCAGCTGCA
          1 AACAGCAGCAGCTGCA

       1877 TCAGCAACAG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   40  1.00

ACGTcount: A:0.38, C:0.23, G:0.28, T:0.11


Consensus pattern (24 bp):   
AACAGCAGCAGCTGCAATATGAGG
Done.