Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01210.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1796
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29


Found at i:88 original size:6 final size:6

Alignment explanation


    Indices: 77--107  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         67 TGAAAACCAT

                                                
         77 CGTCTC CGTCTC CGTCTC CGTCTC CGTCTC C
          1 CGTCTC CGTCTC CGTCTC CGTCTC CGTCTC C

        108 ATCTTTCTCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32


Consensus pattern (6 bp):   
CGTCTC

Done.