Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01215.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4445
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23


Found at i:149 original size:15 final size:15

Alignment explanation


    Indices: 129--158  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        119 AAAATTGTCT

                           
        129 GGTTTTAAGACATCC
          1 GGTTTTAAGACATCC

                           
        144 GGTTTTAAGACATCC
          1 GGTTTTAAGACATCC

        159 TCCACACTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Consensus pattern (15 bp):   
GGTTTTAAGACATCC
Done.