Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01217.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2260
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28


Found at i:530 original size:3 final size:3

Alignment explanation


    Indices: 524--555  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        514 TGATGATGTT

                                                *     
        524 GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        556 GGATTTTGTG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
GAA

Done.