Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01218.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2775
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35


Found at i:1603 original size:49 final size:51

Alignment explanation


    Indices: 1548--1645  Score: 137
    Period size: 49  Copynumber: 2.0  Consensus size: 51

       1538 CTTGGATATA

                    *                  *               *       
       1548 GTTGGAGTTAACATTAATCTTT-T-TGTATGAAAAAACAGAGGGCCAAAGT
          1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGACCAAAGT

                                        *           *        
       1597 GTTGGAGTCAACATTAATCTTTCTATGCGTGAAAAAACAGTGGACCAAA
          1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGACCAAA

       1646 TATAACTATA


Statistics
Matches: 42,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  49   21  0.50
  50    1  0.02
  51   20  0.48

ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29


Consensus pattern (51 bp):   
GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGACCAAAGT
Done.