Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01224.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33


Found at i:953 original size:18 final size:19

Alignment explanation


    Indices: 915--953  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        905 AAAACAAACT

                            *  
        915 AAAATAAAAGAAATAGCCA
          1 AAAATAAAAGAAATAGACA

                               
        934 AAAATAAAAGAAATA-ACA
          1 AAAATAAAAGAAATAGACA

              
        952 AA
          1 AA

        954 TCAAAGAATA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    4  0.21
  19   15  0.79

ACGTcount: A:0.74, C:0.08, G:0.08, T:0.10


Consensus pattern (19 bp):   
AAAATAAAAGAAATAGACA
Done.