Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01228.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32


Found at i:722 original size:25 final size:25

Alignment explanation


    Indices: 674--722  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        664 ACAGTTTTAC

                                     
        674 CCCTAGGAGATAAATTACCGAAATA
          1 CCCTAGGAGATAAATTACCGAAATA

                     *          *    
        699 CCCTAGG-GTTAAATTGACCTAAAT
          1 CCCTAGGAGATAAATT-ACCGAAAT

        723 GCATGTTTGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    7  0.33
  25   14  0.67

ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24


Consensus pattern (25 bp):   
CCCTAGGAGATAAATTACCGAAATA
Done.