Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01238.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4401
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31


Found at i:3669 original size:28 final size:28

Alignment explanation


    Indices: 3615--3677  Score: 67
    Period size: 29  Copynumber: 2.2  Consensus size: 28

       3605 AAAATTTAAA

                           *   *         
       3615 TTATTTTTACTAATTTAAATATGAAATAT
          1 TTATTTTTACTAATTAAAAAATGAAAT-T

                                         
       3644 TTATTTTTACATAA-TAAAAAAT-AAATT
          1 TTATTTTTAC-TAATTAAAAAATGAAATT

                   
       3671 TTGATTT
          1 TT-ATTT

       3678 GATTCAGGTC


Statistics
Matches: 30,  Mismatches: 2, Indels: 5
        0.81            0.05        0.14

Matches are distributed among these distances:
  27    3  0.10
  28    8  0.27
  29   16  0.53
  30    3  0.10

ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51


Consensus pattern (28 bp):   
TTATTTTTACTAATTAAAAAATGAAATT
Done.