Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga09g01255.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2169
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Found at i:1931 original size:17 final size:17

Alignment explanation


    Indices: 1909--1942  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1899 GGTTAGATAA

                             
       1909 ATTAAACTAATGGTAAC
          1 ATTAAACTAATGGTAAC

                             
       1926 ATTAAACTAATGGTAAC
          1 ATTAAACTAATGGTAAC

       1943 CATGGCAACG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29


Consensus pattern (17 bp):   
ATTAAACTAATGGTAAC
Done.